PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10009623m
Common NameCICLE_v10009623mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YB
Protein Properties Length: 187aa    MW: 20242.7 Da    PI: 7.0602
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10009623mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB185.54e-5825120297
            NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                      reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGfe+yveplkvyl+++re+eg
  Ciclev10009623m  25 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEG 118
                      89******************************************************************************************** PP

            NF-YB  96 ek 97 
                      ek
  Ciclev10009623m 119 EK 120
                      97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.9E-5422125IPR009072Histone-fold
SuperFamilySSF471137.3E-4027123IPR009072Histone-fold
PfamPF008085.8E-283094IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.5E-215876No hitNo description
PROSITE patternPS0068506177IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.5E-217795No hitNo description
PRINTSPR006155.5E-2196114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGDSDNDSGG ERERQHGSSR ELSPREQDRF LPIANVSRIM KKALPANAKI SKDAKETVQE  60
CVSEFISFVT GEASDKCQRE KRKTINGDDL LWAMTTLGFE EYVEPLKVYL QRFREMEGEK  120
MARDKDAPPG HGVGGAIGGE YGGMMMMGHG GQLNQGNVYG SGGFHHQMAM SSKGGPTSGG  180
SLGRPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B5e-4822115194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A5e-4822115194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006452586.11e-137hypothetical protein CICLE_v10009623mg
RefseqXP_006474895.11e-137PREDICTED: nuclear transcription factor Y subunit B-3
SwissprotO233102e-70NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A067EZ041e-136A0A067EZ04_CITSI; Uncharacterized protein
TrEMBLV4UTD61e-136V4UTD6_9R
STRINGGLYMA18G08620.11e-84(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-71nuclear factor Y, subunit B3